Warp integrates novel algorithms for frame alignment, defocus estimation, particle picking and tomographic reconstruction in a rich user interface. Thanks to its on-the-fly processing mode and integration with SPA tools like cryoSPARC and RELION, you can monitor data quality in real time, analyze data at the microscope, and obtain high-resolution structures even before you data collection is over.
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WARP3D is under continuing development as a research and production quality code for the solution of large-scale, 3-D solid models subjected to static and dynamic loads. The capabilities of the code focus on fatigue & fracture analyses primarily in met.
Frame alignment
Correct global and local motion in cryo-EM movies while maintaining intuitive control over the physical model's complexity.
Defocus estimation
Estimate local defocus without the need for particle positions. Easy video to gif 2 4 0 5. Tilted data can be processed transparently just like conventional data to address problems with preferred particle orientation.
Warp free download - Warp, Warp, Date Warp, and many more programs. After installing FP40 it would run when I put 2 GB into the machine (it still didn't recognize the full 2 GB as available due to the way the kernel handles memory on Warp 3). Something to consider - given the fact that Warp 3 was released 23 years ago (1994) unless you're doing this for fun you might just want to wait for Blue Lion.
Particle picking
Use a Deep Learning-based model pre-trained on many SPA datasets to pick particles and mask out artifacts accurately without any additional input. Or retrain it on your data to achieve human-like accuracy.
Tomography
While Warp's first release focuses on 2D data, it is also a great tool to prepare data for sub-tomogram averaging. Warp implements many new algorithms that improve the quality of tomographic reconstructions.
Plug it in
Warp can talk to popular SPA tools like cryoSPARC and RELION – no clumsy conversion scripts needed. Anymp4 mac video converter ultimate 8 2 18 0. Plug Warp's constantly updated stream of accurately picked particles into one of them, and observe how your results improve with every new job completed.
Stunning looks and handling
Warp's user interface isn't a mere afterthought. It is designed to let you handle thousands of micrographs with ease, and spot problems in data collection or processing right when they occur – so you don't waste time at the microscope.
OS2 Warp on Linux I know what most of you may be saying or thinking. “OS/2. Why?” Or maybe something similar. There may be that one reader that is thinking, “All right!” (I doubt it). The reason to do this is that some users may remember the day when they had to work with OS/2. I also like to show the ability of Oracle's VirtualBox as well. To run OS/2 on your Linux system, you will need:
Oracle's VirtualBox found at https://www.virtualbox.org/wiki/Downloads
OS/2 Warp version 4.0 (CD version) found at https://winworldpc.com/product/os-2-warp-4/os-2-warp-40
NOTE: There is also a download for OS/2 Warp 4.52 which will also work. I suggest downloading from this site since most other sites provide the boot floppy images as DSK files which do not work well. It is best to use the IMG floppy images. Download VirtualBox and install it, if you do not have it yet. Download and extract the OS/2 Warp 4.0 CD Version. Once extracted, there should be four files you need:
Installation.img
Disk01.img
Disk02.img
IBM_OS2_Warp_4.iso
To set up VirtualBox, do the following:
Create a new Machine
Enter the name for the Machine as desired
Set Type to IBM OS/2
Set Version to OS/2 Warp 4 (or 4.5 if you downloaded the 4.5 version) and click “Next”
Set your RAM size – 1024 should be fine and click “Next”
Set the drive option to “Create a virtual hard drive now” the click “Create”
Make sure VDI is selected and click “Next”
Select “Dynamically Allocated” and click “Next”
Specify the file location and set the minimum to 2 GB and click “Create”
NOTE: Some of you may prefer a Fixed Disk image which should be fine, it just takes longer to make. The machine is now created, but still requires configuration as follows:
Under System and the Motherboard tab, the Chipset option should be PIIX3
Change the Boot Order to Floppy, Hard Disk and then CD/DVD
All three extended feature options should be unchecked. If you have multiple processors, then check “Enable I/O APIC”
Under the Processor Tab, uncheck “Enable PAE/NX” and set the maximum processors to match your processor count
Under Display, set the Video Memory to the maximum setting
The option “Enable 3D Acceleration” should be checked
Under Storage, the Floppy drive needs to point to the “Installation.img” file
The CD-ROM needs to point to the “IBM_OS2_Warp_4.iso”
Under Network, set “Adapter 1” to “Bridged Adapter”
These are all the necessary settings that you should need to get IBM OS/2 going in VirtualBox. Start the Machine and at Figure 1, select “Devices” from the VirtualBox menu and select “Floppy Devices”. Under “Floppy Devices” select “Disk01.img” from where the files were extracted. Click on the Virtual OS screen and press “Enter”. When a similar screen appears asking for Disk 2, change the “Disk01.img” to “Disk02.img” and press “Enter” again to continue the installation. At the “Welcome” screen as shown in Figure 2, press “Enter”.
FIGURE 2
The next screen, Figure 3, is where you start the installation by selecting an install method. The Easy method is fine to use, so press “Enter”. The next screen asks to reinsert the installation floppy in the drive, so change the Floppy Device to “Installation.img” and then press “Enter”. The Virtual OS should reboot and ask you to remove the Installation disk and replace it with Disk 1. To do this, open “Floppy Devices” and select “Disk01.img” before pressing “Enter”. The same will happen again with Disk 2. At the Welcome screen, press “Enter” again. Now, you should see a screen similar to Figure 3 which shows the OS/2 installation starting to copy files to the hard drive.
FIGURE 3
After the files copy, you should see a screen like Figure 4. Now, you need to click “Devices” and “Floppy Devices” and then select “Remove Disk from Virtual Drive” and press “Enter” to continue.
FIGURE 4
The virtual system should reboot and load OS/2 Warp. If you get any issues here, make sure the boot order is Floppy, Hard disk and then CD/DVD. Figure 5 shows a System Configuration screen which you can set the items appropriately.
Warp 9 Speed
FIGURE 5
Click “Next” to set up more system settings. After clicking “Next” again, you are prompted to select a printer. Simply click “OK” to not install a default printer. The next screen, Figure 6, prompts you to set up Networking Services. If you have a network adapter and you are on the Internet, click the top option “Access the Internet” and click “Next”.
FIGURE 6
The next screen shows the detected network adapter, click “Next”. The next screen asks about the network adapter configuration. Select “No” and then “Next”. The next screen has the TCP/IP Services highlighted so click “Install”. Another installation process should start. Once it finishes, it will prompt you that it will restart the system. After a few seconds, the Virtual OS will restart and reload to continue the installation. After nearly a minute on the OS2 text screen, the Warp title screen should appear. The installation process should continue again and will once again restart the Virtual OS. After it starts up, the main GUI screen should appear with a screen for a Tutorial. The main GUI is shown in Figure 7.
FIGURE 7
At this point, OS/2 Warp version 4 is installed and running. Searching the Internet you should be able to find applications and games to run under OS/2.